Publikationen
2026
++nnU-Net: Scaling nnU-Net with Prefix-Based Data Augmentation
Ana Sofia Ferreira Santos, André Ferreira, Gijs Luijten, Naida Solak, Lisle Faray de Paiva, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Victor Alves
arXiv — 2026-06
VS-DDPM: Efficient Low-Cost Diffusion Model for Medical Modality Translation
Nikoo Moradi, Gijs Luijten, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger, André Ferreira
arXiv — 2026-04-24
Achieving Over 10× Faster Sample Generation with Conditional Denoising Diffusion
André Ferreira, Gijs Luijten, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger
Segmentation, Classification, and Synthesis for Brain Tumors and Traumatic Brain Injuries — 2026-04
OncoVR - Virtual Reality in Oncology for Patient-centered Care: A Systematic Review and Meta-Analysis
Miriam Balzer, Abdelrahman Elsakka, Gijs Luijten, Katrin Schormann, Slobodan Jovic, Monja Gerigk, Laura Mazilescu, Sophia Marie-Therese Schmitz, Julius Keyl, Stefan Liszio, Oliver Basu, Beata Maria Goraus, Stefan Kasper-Virchow, Jens Kleesiek, Behrus Hinrichs-Puladi, Jan Egger
Current Oncology Reports — 2026-03-26
Usability Study of Augmented Reality Visualization Modalities on Localization Accuracy in the Head and Neck: Randomized Crossover Trial
Yao Li, Gijs Luijten, Christina Gsaxner, Kim Grunert, Alexis Bader, Frank Hölzle, Rainer Röhrig, Matías de la Fuente, Jan Egger, Kunpeng Xie, Behrus Hinrichs-Puladi
JMIR Serious Games — 2026-01-13 2025
Beyond the Desktop: XR-Driven Segmentation with Meta Quest 3 and MX Ink
Lisle Faray de Paiva, Gijs Luijten, Ana Sofia Ferreira Santos, Moon Kim, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger
arXiv — 2025-06-05
Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment: Status Quo
Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Yuxuan Chen, Behrus Hinrichs-Puladi, Fen-hua Zhao, Kelsey L. Pomykala, Jens Kleesiek, Alejandro F. Frangi, Jan Egger
ACM Comput. Surv. — 2025-04
Is DeepSeek-R1 a Game Changer in Healthcare? - A Seed Review
Jan Egger, Lisle Faray de Paiva, Gijs Luijten, Chayakrit Krittanawong, Julius Keyl, Malik Sallam, Behrus Hinrichs-Puladi
TechRxiv — 2025-03-24
Comparative Analysis of nnUNet and MedNeXt for Head and Neck Tumor Segmentation in MRI-Guided Radiotherapy
Nikoo Moradi, André Ferreira, Behrus Hinrichs-Puladi, Jens Kleesiek, Emad Fatemizadeh, Gijs Luijten, Victor Alves, Jan Egger
Head and Neck Tumor Segmentation for MR-Guided Applications — 2025-03-03
Virtual reality support during systemic cancer therapy to improve anxiety/depressive symptoms and reduce toxicity in patients with gastrointestinal cancers—OncoVR
Stefan Kasper-Virchow, Stefan Liszio, Katrin Schormann, Monja Gerigk, Slobodan Jovic, Oliver Basu, K. Kostbade, Beata Maria Goraus, Abdelrahman Elsakka, Behrus Hinrichs-Puladi, Jens Kleesiek, Martin Schuler, Gijs Luijten, Jan Egger
ESMO Gastrointestinal Oncology — 2025-03
How does DeepSeek-R1 perform on USMLE?
Lisle Faray de Paiva, Gijs Luijten, Behrus Hinrichs-Puladi, Jan Egger
medRxiv — 2025-02-10
GBM-Reservoir: Brain tumor (Glioblastoma Multiforme) MRI dataset collection with ground truth segmentation masks
Naida Solak, André Ferreira, Gijs Luijten, Behrus Hinrichs-Puladi, Victor Alves, Jan Egger
Data in Brief — 2025-02
MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision
Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque Rafique Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Soumick Chatterjee, Andreas Nürnberger, Joao Pedrosa, Carlos Ferreira, Guilherme Aresta, Antonio Cunha, Aurelio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin Hendrik Bahnsen, Constantin Seibold, Alexander Jaus, Ana Sofia Ferreira Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon Kim, Shireen Elhabian, Hans Lamecker, Dzenan Zukic, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Ping Luo, Björn Menze, Mauricio Reyes, Christos Davatzikos, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Zongwei Zhou, Jiancheng Yang, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Viet Duc Vu, Christopher Schlachta, Sandrine De Ribaupierre, Rajnikant Patel, Roy Eagleson, Heinrich Mächler, Arcot Sowmya, Vincenzo Ferrari, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Hauke Heidemeyer, Timo van Meegdenburg, Zdravko Marinov, Paul F. Jäger, Rainer Stiefelhagen, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Thomas M. Deserno, Pascal Fua, Alan L. Yuille
Biomedical Engineering / Biomedizinische Technik — 2025-02 2024
Efficient MedSAMs: Segment Anything in Medical Images on Laptop
Jun Ma, Feifei Li, Sumin Kim, Reza Asakereh, Bao-Hiep Le, Dang-Khoa Nguyen-Vu, Alexander Pfefferle, Muxin Wei, Ruochen Gao, Donghang Lyu, Songxiao Yang, Lennart Purucker, Zdravko Marinov, Marius Staring, Haisheng Lu, Thuy Thanh Dao, Xincheng Ye, Zhi Li, Gianluca Brugnara, Philipp Vollmuth, Martha Foltyn-Dumitru, Jaeyoung Cho, Mustafa Ahmed Mahmutoglu, Martin Bendszus, Irada Pflüger, Aditya Rastogi, Dong Ni, Xin Yang, Guang-Quan Zhou, Kaini Wang, Nicholas Heller, Nikolaos Papanikolopoulos, Christopher Weight, Yubing Tong, Jayaram K Udupa, Cahill J. Patrick, Yaqi Wang, Yifan Zhang, Francisco Contijoch, Elliot McVeigh, Xin Ye, Shucheng He, Robert Haase, Thomas Pinetz, Alexander Radbruch, Inga Krause, Erich Kobler, Jian He, Yucheng Tang, Haichun Yang, Yuankai Huo, Gongning Luo, Kaisar Kushibar, Jandos Amankulov, Dias Toleshbayev, Amangeldi Mukhamejan, Jan Egger, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Shohei Fujita, Tomohiro Kikuchi, Benedikt Wiestler, Jan Stefan Kirschke, Ezequiel de la Rosa, Federico Bolelli, Luca Lumetti, Costantino Grana, Kunpeng Xie, Guomin Wu, Behrus Hinrichs-Puladi, Carlos Martín-Isla, Karim Lekadir, Victor M. Campello, Wei Shao, Wayne Brisbane, Hongxu Jiang, Hao Wei, Wu Yuan, Shuangle Li, Yuyin Zhou, Bo Wang
arXiv — 2024-12-20
Brain Tumour Removing and Missing Modality Generation using 3D WDM
André Ferreira, Gijs Luijten, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger
arXiv — 2024-12
Improved Multi-Task Brain Tumour Segmentation with Synthetic Data Augmentation
André Ferreira, Tiago Jesus, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger
arXiv — 2024-12
Is the Apple Vision Pro the Ultimate Display? A First Perspective and Survey on Entering the Wonderland of Precision Medicine
Jan Egger, Christina Gsaxner, Gijs Luijten, Jianxu Chen, Xiaojun Chen, Jiang Bian, Jens Kleesiek, Behrus Hinrichs-Puladi
JMIR Serious Games — 2024-09-18
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images
Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till Braunschweig, Jianning Li, Jens Kleesiek, Rainer Röhrig, Jan Egger, Bastian Leibe, Frank Hölzle, Alexander Hermans, Behrus Hinrichs-Puladi
Computer Methods and Programs in Biomedicine — 2024-07
A Baseline Solution for the ISBI 2024 Dreaming Challenge
Timo van Meegdenburg, Gijs Luijten, Jens Kleesiek, Behrus Hinrichs-Puladi, André Ferreira, Jan Egger, Christina Gsaxner
2024 IEEE International Symposium on Biomedical Imaging (ISBI) — 2024-05-27
Generalisation of Segmentation Using Generative Adversarial Networks
André Ferreira, Gijs Luijten, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger
2024 IEEE International Symposium on Biomedical Imaging (ISBI) — 2024-05-27
A Meta-Review about Medical 3D Printing
Melissa Meister, Gijs Luijten, Christina Gsaxner, Kunpeng Xie, Lennart J. Gruber, Jianning Li, Antonio Pepe, Yao Li, Ashkan Rashad, Constantin Seibold, Fin Hendrik Bahnsen, Moon Kim, Nino Fijačko, Frank Hölzle, Malik Sallam, Rainer Röhrig, Gregor Štiglic, Julius Keyl, Jens Kleesiek, Victor Alves, Xiaojun Chen, Behrus Hinrichs-Puladi, Jan Egger
medRxiv — 2024-04-12
Medical ChatGPT – A systematic Meta-Review
Jan Egger, Malik Sallam, Gijs Luijten, Christina Gsaxner, Antonio Pepe, Jens Kleesiek, Behrus Hinrichs-Puladi, Jianning Li
medRxiv — 2024-04-03
A Semi-automatic Cranial Implant Design Tool Based on Rigid ICP Template Alignment and Voxel Space Reconstruction
Michael Lackner, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Jianning Li
arXiv — 2024-03
Advancing Healthcare Through Open Science: StudierFenster and MedShapeNet
Christina Gsaxner, Gijs Luijten, Jianning Li, Jens Kleesiek, Behrus Hinrichs-Puladi, Jan Egger
2024-03
Deep PCCT: Photon Counting Computed Tomography Deep Learning Applications Review
Ana Carolina Alves, André Ferreira, Gijs Luijten, Jens Kleesiek, Behrus Hinrichs-Puladi, Jan Egger, Victor Alves
arXiv — 2024-02
Diminished Reality for Emerging Applications in Medicine through Inpainting
Christina Gsaxner, Shohei Mori, Gijs Luijten, Viet Duc Vu, Timo van Meegdenburg, Gabriele A. Krombach, Jens Kleesiek, Eck Ulrich, Nassir Navab, Yan Guo, Xiaojun Chen, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger
2024-02
Response to the comment on “The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review”
Behrus Hinrichs-Puladi, Christina Gsaxner, Jens Kleesiek, Frank Hölzle, Rainer Röhrig, Jan Egger
International Journal of Oral and Maxillofacial Surgery — 2024-02
What is Diminished Virtuality? A Directional and Layer-Based Taxonomy for the Reality-Virtuality Continuum
Jan Egger, Christina Gsaxner, Jens Kleesiek, Behrus Hinrichs-Puladi
JMIR XR and Spatial Computing — 2024-01-31
CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images
Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till Braunschweig, Jianning Li, Jens Kleesiek, Rainer Röhrig, Jan Egger, Bastian Leibe, Frank Hölzle, Alexander Hermans, Behrus Hinrichs-Puladi
Zenodo — 2024-01-26
ChatGPT in healthcare: A taxonomy and systematic review
Jianning Li, Amin Dada, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger
Computer Methods and Programs in Biomedicine 2023
3D surgical instrument collection for computer vision and extended reality
Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger
Scientific Data — 2023-11
3D-COSI ~ 3D Collection of Surgical Instruments
Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger
2023-10
The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review
Behrus Hinrichs-Puladi, Christina Gsaxner, Jens Kleesiek, Frank Hölzle, Rainer Röhrig, Jan Egger
International Journal of Oral and Maxillofacial Surgery — 2023-10
Apple Vision Pro for Healthcare: "The Ultimate Display"?
Jan Egger, Christina Gsaxner, Xiaojun Chen, Jiang Bian, Jens Kleesiek, Behrus Hinrichs-Puladi
arXiv — 2023-08
Open-source skull reconstruction with MONAI
Jianning Li, André Ferreira, Behrus Hinrichs-Puladi, Victor Alves, Michael Kamp, Moon Kim, Felix Nensa, Jens Kleesiek, Seyed-Ahmad Ahmadi, Jan Egger
SoftwareX — 2023-07 2022
Radiomics in Head and Neck Cancer Outcome Predictions
Maria Gonçalves, Christina Gsaxner, André Ferreira, Jianning Li, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Victor Alves
Diagnostics — 2022-11-08
Open-Source Skull Reconstruction with MONAI
Jianning Li, André Ferreira, Behrus Hinrichs-Puladi, Victor Alves, Michael Kamp, Moon Kim, Felix Nensa, Jens Kleesiek, Seyed-Ahmad Ahmadi, Jan Egger
arXiv — 2022-11 
