Publications
2026
An explainable transformer model learning from entire treatment timelines for pan-cancer risk profiling across healthcare systems
Philipp Keyl, Niklas Kiermeyer, Jonah Bosserhoff, Tim Lenfers, Thibault Niederhauser, Bowen Fan, Thomas Schnake, Simon Schallenberg, Fabio Aubele, Solveig Kuss, Mina Jamshidi Idaji, Philipp Jurmeister, Moon Kim, Sebastian Bauer, Nikolaos Bechrakis, Michael Forsting, Dagmar Führer-Sakel, Martin Glas, Viktor Grünwald, Boris Hadaschik, Ken Herrmann, Stefan Kasper-Virchow, Rainer Kimmig, Stephan Lang, Ina Pretzell, Tienush Rassaf, Alexander Rösch, Jens T. Siveke, Maja Guberina, Ulrich Sure, Marc Wichert, Michael Ingrisch, Kristian Unger, Jürgen Behr, Daniel Teupser, Christian G. Stief, Julia Mayerle, Nadia Harbeck, Amanda Tufman, Jens Ricke, Lars H. Lindner, Siegfried Priglinger, Günter Höglinger, Sven Mahner, Martin Canis, Lucie Heinzerling, Christine Spitzweg, Alpaslan Tasdogan, Matthias Totzeck, Anja Welt, Marcel Wiesweg, C. Benedikt Westphalen, Reinhard Thasler, Fady Albashiti, Grégoire Montavon, Nicola Miglino, Zsolt Balazs, Michael von Bergwelt-Baildon, Volker Heinemann, Claus Belka, Sylvia Hartmann, Andreas Wicki, Felix Nensa, Dirk Schadendorf, Michael Krauthammer, Klaus-Robert Müller, Martin Schuler, Frederick Klauschen, Jens Kleesiek, Julius Keyl
medRxiv — 2026-07
The autoPET3 Challenge: Automated Lesion Segmentation in Whole-Body PET/CT – Multitracer Multicenter Generalization
Jakob Dexl, Katharina Jeblick, Andreas Mittermeier, Balthasar Schachtner, Anna Theresa Stüber, Johanna Topalis, Maximilian R. Rokuss, Fabian Isensee, Klaus Maier-Hein, Hamza Kalisch, Jens Kleesiek, Constantin Seibold, Hussain Alasmawi, Lap Yan Lennon Chan, Yixuan Yuan, Alexander Jaus, Rainer Stiefelhagen, Pauline Ornela Megne Choudja, Konstantin Nikolaou, Christian la Fougère, Sergios Gatidis, Matthias P. Fabritius, Maurice Heimer, Gizem Abaci, Lalith Kumar Shiyam Sundar, Rudolf A. Werner, Jens Ricke, Clemens C. Cyran, Thomas Küstner, Michael Ingrisch
arXiv — 2026-05
Reporting checklist for foundation and large language models in medical research (REFINE): an international consensus guideline
Ismail Mese, Tugba Akinci D’Antonoli, Christian Blüthgen, Keno K. Bressem, Renato Cuocolo, Akshay Chaudhari, Ali S. Tejani, Amanda Isaac, Andrea Ponsiglione, Aymen Meddeb, Bardia Khosravi, Bastien Le Guellec, Charles E. Kahn, Chong Hyun Suh, Daniel Pinto dos Santos, Dow-Mu Koh, Eleftherios Tzanis, Elmar Kotter, Errol Colak, Felipe Kitamura, Felix Busch, Felix Nensa, Guang Yang, Henning Müller, Jakob Nikolas Kather, Jawed Nawabi, Jens Kleesiek, Jingyu Zhong, João Santinha, Johannes Haubold, José Guilherme De Almeida, Karim Lekadir, Kostas Marias, Lara Noelle Reiner, Lena Maier-Hein, Linda Moy, Lisa C. Adams, Luis Martí-Bonmatí, Magdalini Paschali, Mana Moassefi, Matthias Dietzel, Merel Huisman, Michael Ingrisch, Michail E. Klontzas, Nikolaos Papanikolaou, Oliver Diaz, Paulo Kuriki, Philipp Seeböck, Pouria Rouzrokh, Quirin D. Strotzer, Seong Ho Park, Shahriar Faghani, Soroosh Tayebi Arasteh, Su Hwan Kim, Vasantha Kumar Venugopal, Woojin Kim, Burak Kocak
Diagnostic and Interventional Radiology — 2026-02 2025
AutoPET Challenge on Fully Automated Lesion Segmentation in Oncologic PET/CT Imaging, Part 2: Domain Generalization
Jakob Dexl, Sergios Gatidis, Marcel Früh, Katharina Jeblick, Andreas Mittermeier, Anna Theresa Stüber, Balthasar Schachtner, Johanna Topalis, Matthias P. Fabritius, Sijing Gu, Gowtham Krishnan Murugesan, Jeff VanOss, Jin Ye, Junjun He, Anissa Alloula, Bartłomiej W. Papież, Zacharia Mesbah, Romain Modzelewski, Matthias Hadlich, Zdravko Marinov, Rainer Stiefelhagen, Fabian Isensee, Klaus Maier-Hein, Adrian Galdran, Konstantin Nikolaou, Christian la Fougère, Moon Kim, Nico Kallenberg, Jens Kleesiek, Ken Herrmann, Rudolf A. Werner, Michael Ingrisch, Clemens C. Cyran, Thomas Küstner
Journal of Nuclear Medicine — 2025-12 2024
Results from the autoPET challenge on fully automated lesion segmentation in oncologic PET/CT imaging
Sergios Gatidis, Marcel Früh, Matthias P. Fabritius, Sijing Gu, Konstantin Nikolaou, Christian la Fougère, Jin Ye, Junjun He, Yige Peng, Lei Bi, Jun Ma, Bo Wang, Jia Zhang, Yukun Huang, Lars Heiliger, Zdravko Marinov, Rainer Stiefelhagen, Jan Egger, Jens Kleesiek, Ludovic Sibille, Lei Xiang, Simone Bendazzoli, Mehdi Astaraki, Michael Ingrisch, Clemens C. Cyran, Thomas Küstner
Nature Machine Intelligence — 2024-10 2023
The autoPET challenge: Towards fully automated lesion segmentation in oncologic PET/CT imaging
Sergios Gatidis, Marcel Früh, Matthias P. Fabritius, Sijing Gu, Christian la Fougère, Jin Ye, Junjun He, Yige Peng, Lei Bi, Jun Ma, Bo Wang, Jia Zhang, Yukun Huang, Lars Heiliger, Zdravko Marinov, Rainer Stiefelhagen, Jan Egger, Jens Kleesiek, Ludovic Sibille, Lei Xiang, Simone Bendazzoli, Mehdi Astaraki, Bernhard Schölkopf, Michael Ingrisch, Clemens C. Cyran, Thomas Küstner
2023-06 2020
Joint Imaging Platform for Federated Clinical Data Analytics
Jonas Scherer, Marco Nolden, Jens Kleesiek, Jasmin Metzger, Klaus Kades, Verena Schneider, Michael Bach, Oliver Lukas Sedlaczek, Andreas Bucher, Thomas J. Vogl, Frank Grünwald, Jens-Peter Kühn, Ralf-Thorsten Hoffmann, Jörg Kotzerke, Oliver Bethge, Lars Schimmöller, Gerald Antoch, Hans-Wilhelm Müller, Andreas Daul, Konstantin Nikolaou, Christian la Fougère, Wolfgang G. Kunz, Michael Ingrisch, Balthasar Schachtner, Jens Ricke, Peter Bartenstein, Felix Nensa, Alexander Radbruch, Lale Umutlu, Michael Forsting, Robert Seifert, Ken Herrmann, Philipp Mayer, Hans-Ulrich Kauczor, Tobias Penzkofer, Bernd Hamm, Winfried Brenner, Roman Klöckner, Christoph Düber, Mathias Schreckenberger, Rickmer Braren, Georgios Kaissis, Marcus R. Makowski, Matthias Eiber, Andrei Gafita, Rupert Trager, Wolfgang A. Weber, Jakob Neubauer, Marco Reisert, Michael Bock, Fabian Bamberg, Jürgen Hennig, Philipp Tobias Meyer, Juri Ruf, Uwe Haberkorn, Stefan O. Schönberg, Tristan Kuder, Peter Neher, Ralf Floca, Heinz-Peter Schlemmer, Klaus Maier-Hein
JCO Clinical Cancer Informatics — 2020-11 
