Publications
2026
Usability Study of Augmented Reality Visualization Modalities on Localization Accuracy in the Head and Neck: Randomized Crossover Trial
Yao Li, Gijs Luijten, Christina Gsaxner, Kim Grunert, Alexis Bader, Frank Hölzle, Rainer Röhrig, Matías de la Fuente, Jan Egger, Kunpeng Xie, Behrus Hinrichs-Puladi
JMIR Serious Games — 2026-01-13 2025
Performing the HINTS-exam using a mixed-reality head-mounted display in patients with acute vestibular syndrome: a feasibility study
Nadia Sadok, Gijs Luijten, Fin Hendrik Bahnsen, Christina Gsaxner, Lorenz Peters, Theda Eichler, Theresa Rombach, Stephan Lang, Sameh Khattab, Jens Kleesiek, Dagny Holle, Moritz Meyer, Jan Egger
Frontiers in Neurology — 2025-05
Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment: Status Quo
Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Yuxuan Chen, Behrus Hinrichs-Puladi, Fen-hua Zhao, Kelsey L. Pomykala, Jens Kleesiek, Alejandro F. Frangi, Jan Egger
ACM Comput. Surv. — 2025-04
MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision
Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque Rafique Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Soumick Chatterjee, Andreas Nürnberger, Joao Pedrosa, Carlos Ferreira, Guilherme Aresta, Antonio Cunha, Aurelio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin Hendrik Bahnsen, Constantin Seibold, Alexander Jaus, Ana Sofia Ferreira Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon Kim, Shireen Elhabian, Hans Lamecker, Dzenan Zukic, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Ping Luo, Björn Menze, Mauricio Reyes, Christos Davatzikos, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Zongwei Zhou, Jiancheng Yang, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Viet Duc Vu, Christopher Schlachta, Sandrine De Ribaupierre, Rajnikant Patel, Roy Eagleson, Heinrich Mächler, Arcot Sowmya, Vincenzo Ferrari, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Hauke Heidemeyer, Timo van Meegdenburg, Zdravko Marinov, Paul F. Jäger, Rainer Stiefelhagen, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Thomas M. Deserno, Pascal Fua, Alan L. Yuille
Biomedical Engineering / Biomedizinische Technik — 2025-02 2024
Efficient MedSAMs: Segment Anything in Medical Images on Laptop
Jun Ma, Feifei Li, Sumin Kim, Reza Asakereh, Bao-Hiep Le, Dang-Khoa Nguyen-Vu, Alexander Pfefferle, Muxin Wei, Ruochen Gao, Donghang Lyu, Songxiao Yang, Lennart Purucker, Zdravko Marinov, Marius Staring, Haisheng Lu, Thuy Thanh Dao, Xincheng Ye, Zhi Li, Gianluca Brugnara, Philipp Vollmuth, Martha Foltyn-Dumitru, Jaeyoung Cho, Mustafa Ahmed Mahmutoglu, Martin Bendszus, Irada Pflüger, Aditya Rastogi, Dong Ni, Xin Yang, Guang-Quan Zhou, Kaini Wang, Nicholas Heller, Nikolaos Papanikolopoulos, Christopher Weight, Yubing Tong, Jayaram K Udupa, Cahill J. Patrick, Yaqi Wang, Yifan Zhang, Francisco Contijoch, Elliot McVeigh, Xin Ye, Shucheng He, Robert Haase, Thomas Pinetz, Alexander Radbruch, Inga Krause, Erich Kobler, Jian He, Yucheng Tang, Haichun Yang, Yuankai Huo, Gongning Luo, Kaisar Kushibar, Jandos Amankulov, Dias Toleshbayev, Amangeldi Mukhamejan, Jan Egger, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Shohei Fujita, Tomohiro Kikuchi, Benedikt Wiestler, Jan Stefan Kirschke, Ezequiel de la Rosa, Federico Bolelli, Luca Lumetti, Costantino Grana, Kunpeng Xie, Guomin Wu, Behrus Hinrichs-Puladi, Carlos Martín-Isla, Karim Lekadir, Victor M. Campello, Wei Shao, Wayne Brisbane, Hongxu Jiang, Hao Wei, Wu Yuan, Shuangle Li, Yuyin Zhou, Bo Wang
arXiv — 2024-12-20
Is the Apple Vision Pro the Ultimate Display? A First Perspective and Survey on Entering the Wonderland of Precision Medicine
Jan Egger, Christina Gsaxner, Gijs Luijten, Jianxu Chen, Xiaojun Chen, Jiang Bian, Jens Kleesiek, Behrus Hinrichs-Puladi
JMIR Serious Games — 2024-09-18
MultiAR: A Multi-User Augmented Reality Platform for Biomedical Education
Markus Perz, Gijs Luijten, Jens Kleesiek, Dieter Schmalstieg, Jan Egger, Christina Gsaxner
2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) — 2024-07-15
A Baseline Solution for the ISBI 2024 Dreaming Challenge
Timo van Meegdenburg, Gijs Luijten, Jens Kleesiek, Behrus Hinrichs-Puladi, André Ferreira, Jan Egger, Christina Gsaxner
2024 IEEE International Symposium on Biomedical Imaging (ISBI) — 2024-05-27
Deep Learning-based Point Cloud Registration for Augmented Reality-guided Surgery
Maximilian Weber, Daniel Wild, Jens Kleesiek, Jan Egger, Christina Gsaxner
arXiv — 2024-05
Eye tracker-based differentiation of causes of acute Vertigo: A mobile approach for faster and more accurate triage and diagnosis
Nadia Sadok, Gijs Luijten, Fin Hendrik Bahnsen, Christina Gsaxner, Lorenz Peters, Theda Eichler, Theresa Rombach, Constantin Seibold, Stephan Lang, Sameh Khattab, Jan Egger, Dagny Holle-Lee, Moritz Meyer, Jens Kleesiek
Laryngo-Rhino-Otologie — 2024-04-19
A Meta-Review about Medical 3D Printing
Melissa Meister, Gijs Luijten, Christina Gsaxner, Kunpeng Xie, Lennart J. Gruber, Jianning Li, Antonio Pepe, Yao Li, Ashkan Rashad, Constantin Seibold, Fin Hendrik Bahnsen, Moon Kim, Nino Fijačko, Frank Hölzle, Malik Sallam, Rainer Röhrig, Gregor Štiglic, Julius Keyl, Jens Kleesiek, Victor Alves, Xiaojun Chen, Behrus Hinrichs-Puladi, Jan Egger
medRxiv — 2024-04-12
Medical ChatGPT – A systematic Meta-Review
Jan Egger, Malik Sallam, Gijs Luijten, Christina Gsaxner, Antonio Pepe, Jens Kleesiek, Behrus Hinrichs-Puladi, Jianning Li
medRxiv — 2024-04-03
Advancing Healthcare Through Open Science: StudierFenster and MedShapeNet
Christina Gsaxner, Gijs Luijten, Jianning Li, Jens Kleesiek, Behrus Hinrichs-Puladi, Jan Egger
2024-03
Diminished Reality for Emerging Applications in Medicine through Inpainting
Christina Gsaxner, Shohei Mori, Gijs Luijten, Viet Duc Vu, Timo van Meegdenburg, Gabriele A. Krombach, Jens Kleesiek, Eck Ulrich, Nassir Navab, Yan Guo, Xiaojun Chen, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger
2024-02
Response to the comment on “The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review”
Behrus Hinrichs-Puladi, Christina Gsaxner, Jens Kleesiek, Frank Hölzle, Rainer Röhrig, Jan Egger
International Journal of Oral and Maxillofacial Surgery — 2024-02
What is Diminished Virtuality? A Directional and Layer-Based Taxonomy for the Reality-Virtuality Continuum
Jan Egger, Christina Gsaxner, Jens Kleesiek, Behrus Hinrichs-Puladi
JMIR XR and Spatial Computing — 2024-01-31 2023
3D surgical instrument collection for computer vision and extended reality
Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger
Scientific Data — 2023-11
3D-COSI ~ 3D Collection of Surgical Instruments
Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger
2023-10
The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review
Behrus Hinrichs-Puladi, Christina Gsaxner, Jens Kleesiek, Frank Hölzle, Rainer Röhrig, Jan Egger
International Journal of Oral and Maxillofacial Surgery — 2023-10
Apple Vision Pro for Healthcare: "The Ultimate Display"?
Jan Egger, Christina Gsaxner, Xiaojun Chen, Jiang Bian, Jens Kleesiek, Behrus Hinrichs-Puladi
arXiv — 2023-08
Towards clinical applicability and computational efficiency in automatic cranial implant design: An overview of the AutoImplant 2021 cranial implant design challenge
Jianning Li, David G. Ellis, Oldřich Kodym, Laurèl Rauschenbach, Christoph Rieß, Ulrich Sure, Karsten H. Wrede, Carlos M. Alvarez, Marek Wodzinski, Mateusz Daniol, Daria Hemmerling, Hamza Mahdi, Allison Clement, Evan Kim, Zachary Fishman, Cari M. Whyne, James G. Mainprize, Michael R. Hardisty, Shashwat Pathak, Chitimireddy Sindhura, Rama Krishna Sai S. Gorthi, Degala Venkata Kiran, Subrahmanyam Gorthi, Bokai Yang, Ke Fang, Xingyu Li, Artem Kroviakov, Lei Yu, Yuan Jin, Antonio Pepe, Christina Gsaxner, Adam Herout, Victor Alves, Michal Španěl, Michele R. Aizenberg, Jens Kleesiek, Jan Egger
Medical Image Analysis — 2023-06
A web-based radiomics module for image feature extraction for tumor characterization
Theresa Hübner, Aaron Berger, Daniel Wild, Jianning Li, Antonio Pepe, Christina Gsaxner, Yuan Jin, Gijs Luijten, Jens Kleesiek, Jan Egger
Medical Imaging 2023: Imaging Informatics for Healthcare, Research, and Applications — 2023-04-10
The HoloLens in medicine: A systematic review and taxonomy
Christina Gsaxner, Jianning Li, Antonio Pepe, Yuan Jin, Jens Kleesiek, Dieter Schmalstieg, Jan Egger
Medical Image Analysis 2022
Radiomics in Head and Neck Cancer Outcome Predictions
Maria Gonçalves, Christina Gsaxner, André Ferreira, Jianning Li, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Victor Alves
Diagnostics — 2022-11-08
The HoloLens in Medicine: A systematic Review and Taxonomy
Christina Gsaxner, Jianning Li, Antonio Pepe, Yuan Jin, Jens Kleesiek, Dieter Schmalstieg, Jan Egger
arXiv — 2022-09
Medical Deep Learning – A systematic Meta-Review
Jan Egger, Christina Gsaxner, Antonio Pepe, Kelsey L. Pomykala, Frederic Jonske, Manuel Kurz, Jianning Li, Jens Kleesiek
Computer Methods and Programs in Biomedicine — 2022-05
AVT: Multicenter aortic vessel tree CTA dataset collection with ground truth segmentation masks
Lukas Radl, Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Fen-hua Zhao, Jan Egger
2022-02
Sparse Convolutional Neural Networks for Medical Image Analysis
Jianning Li, Christina Gsaxner, Antonio Pepe, Dieter Schmalstieg, Jens Kleesiek, Jan Egger
2022-02 2021
Inside-out instrument tracking for surgical navigation in augmented reality
Christina Gsaxner, Jianning Li, Antonio Pepe, Dieter Schmalstieg, Jan Egger
Proceedings of the 27th ACM Symposium on Virtual Reality Software and Technology — 2021-12-08
Learning to rearrange voxels in binary segmentation masks for smooth manifold triangulation
Jianning Li, Antonio Pepe, Christina Gsaxner, Yuan Jin, Jan Egger
Cranial Implant Design Challenge — 2021-12-03
MUG500+: Database of 500 high-resolution healthy human skulls and 29 craniotomy skulls and implants
Jianning Li, Marcell Krall, Florian Trummer, Afaque Rafique Memon, Antonio Pepe, Christina Gsaxner, Yuan Jin, Xiaojun Chen, Hannes Deutschmann, Ulrike Zefferer
2021-12
Automated cross-sectional view selection in CT angiography of aortic dissections with uncertainty awareness and retrospective clinical annotations
Antonio Pepe, Jan Egger, Marina Codari, Martin J. Willemink, Christina Gsaxner, Jianning Li, Peter M. Roth, Gabriel Mistelbauer, Dieter Schmalstieg, Dominik Fleischmann
2021-11-22
Deep learning—a first meta-survey of selected reviews across scientific disciplines, their commonalities, challenges and research impact
Jan Egger, Antonio Pepe, Christina Gsaxner, Yuan Jin, Jianning Li, Roman Kern
2021-11-17
Automatic skull defect restoration and cranial implant generation for cranioplasty
Jianning Li, Gord von Campe, Antonio Pepe, Christina Gsaxner, Enpeng Wang, Xiaojun Chen, Ulrike Zefferer, Martin Tödtling, Marcell Krall, Hannes Deutschmann
2021-10
Ai-based aortic vessel tree segmentation for cardiovascular diseases treatment: status quo
Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Fen-hua Zhao, Jens Kleesiek, Alejandro F. Frangi, Jan Egger
2021-08-06
Augmented reality in oral and maxillofacial surgery
Christina Gsaxner, Ulrich Eck, Dieter Schmalstieg, Nassir Navab, Jan Egger
Computer-Aided Oral and Maxillofacial Surgery — 2021-04-29
Deep learning and generative adversarial networks in oral and maxillofacial surgery
Antonio Pepe, Gianpaolo Francesco Trotta, Christina Gsaxner, Antonio Brunetti, Giacomo Donato Cascarano, Vitoantonio Bevilacqua, Dinggang Shen, Jan Egger
2021-04-29
Radiomics in head and neck cancer
Maria Gonçalves, Christina Gsaxner, Jan Egger, Victor Alves
Computer-Aided Oral and Maxillofacial Surgery — 2021-04-29
SkullBreak/SkullFix–Dataset for automatic cranial implant design and a benchmark for volumetric shape learning tasks
Oldřich Kodym, Jianning Li, Antonio Pepe, Christina Gsaxner, Sasank Chilamkurthy, Jan Egger, Michal Španěl
2021-04
A cloud-based centerline algorithm for Studierfenster
Christina Dionysio, Daniel Wild, Antonio Pepe, Christina Gsaxner, Jianning Li, Luis Alvarez, Jan Egger
Medical Imaging 2021: Imaging Informatics for Healthcare, Research, and Applications — 2021-02-15
A web client-based online DICOM browser and NRRD converter for Studierfenster
Christopher A. Ramirez Bedoya, Daniel Wild, Antonio Pepe, Christina Gsaxner, Jianning Li, Jan Egger
Medical Imaging 2021: Imaging Informatics for Healthcare, Research, and Applications — 2021-02-15
An online platform for automatic skull defect restoration and cranial implant design
Jianning Li, Antonio Pepe, Christina Gsaxner, Jan Egger
Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling — 2021-02-15
Deep learning and particle filter-based aortic dissection vessel tree segmentation
Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Jan Egger
Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging — 2021-02-15
Synthetic skull bone defects for automatic patient-specific craniofacial implant design
Jianning Li, Christina Gsaxner, Antonio Pepe, Ana Morais, Victor Alves, Gord von Campe, Jürgen Wallner, Jan Egger
2021-01-29 
