Antonio Pepe

Antonio Pepe

Research Assistant

Institute of Computer Graphics and Vision, Graz University of Technology, Austria

Publications

2025

Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment: Status Quo Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Yuxuan Chen, Behrus Hinrichs-Puladi, Fen-hua Zhao, Kelsey L. Pomykala, Jens Kleesiek, Alejandro F. Frangi, Jan Egger ACM Comput. Surv. — 2025-04 MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque Rafique Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Soumick Chatterjee, Andreas Nürnberger, Joao Pedrosa, Carlos Ferreira, Guilherme Aresta, Antonio Cunha, Aurelio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin Hendrik Bahnsen, Constantin Seibold, Alexander Jaus, Ana Sofia Ferreira Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon Kim, Shireen Elhabian, Hans Lamecker, Dzenan Zukic, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Ping Luo, Björn Menze, Mauricio Reyes, Christos Davatzikos, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Zongwei Zhou, Jiancheng Yang, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Viet Duc Vu, Christopher Schlachta, Sandrine De Ribaupierre, Rajnikant Patel, Roy Eagleson, Heinrich Mächler, Arcot Sowmya, Vincenzo Ferrari, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Hauke Heidemeyer, Timo van Meegdenburg, Zdravko Marinov, Paul F. Jäger, Rainer Stiefelhagen, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Thomas M. Deserno, Pascal Fua, Alan L. Yuille Biomedical Engineering / Biomedizinische Technik — 2025-02

2024

Efficient MedSAMs: Segment Anything in Medical Images on Laptop Jun Ma, Feifei Li, Sumin Kim, Reza Asakereh, Bao-Hiep Le, Dang-Khoa Nguyen-Vu, Alexander Pfefferle, Muxin Wei, Ruochen Gao, Donghang Lyu, Songxiao Yang, Lennart Purucker, Zdravko Marinov, Marius Staring, Haisheng Lu, Thuy Thanh Dao, Xincheng Ye, Zhi Li, Gianluca Brugnara, Philipp Vollmuth, Martha Foltyn-Dumitru, Jaeyoung Cho, Mustafa Ahmed Mahmutoglu, Martin Bendszus, Irada Pflüger, Aditya Rastogi, Dong Ni, Xin Yang, Guang-Quan Zhou, Kaini Wang, Nicholas Heller, Nikolaos Papanikolopoulos, Christopher Weight, Yubing Tong, Jayaram K Udupa, Cahill J. Patrick, Yaqi Wang, Yifan Zhang, Francisco Contijoch, Elliot McVeigh, Xin Ye, Shucheng He, Robert Haase, Thomas Pinetz, Alexander Radbruch, Inga Krause, Erich Kobler, Jian He, Yucheng Tang, Haichun Yang, Yuankai Huo, Gongning Luo, Kaisar Kushibar, Jandos Amankulov, Dias Toleshbayev, Amangeldi Mukhamejan, Jan Egger, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Shohei Fujita, Tomohiro Kikuchi, Benedikt Wiestler, Jan Stefan Kirschke, Ezequiel de la Rosa, Federico Bolelli, Luca Lumetti, Costantino Grana, Kunpeng Xie, Guomin Wu, Behrus Hinrichs-Puladi, Carlos Martín-Isla, Karim Lekadir, Victor M. Campello, Wei Shao, Wayne Brisbane, Hongxu Jiang, Hao Wei, Wu Yuan, Shuangle Li, Yuyin Zhou, Bo Wang arXiv — 2024-12-20 A Meta-Review about Medical 3D Printing Melissa Meister, Gijs Luijten, Christina Gsaxner, Kunpeng Xie, Lennart J. Gruber, Jianning Li, Antonio Pepe, Yao Li, Ashkan Rashad, Constantin Seibold, Fin Hendrik Bahnsen, Moon Kim, Nino Fijačko, Frank Hölzle, Malik Sallam, Rainer Röhrig, Gregor Štiglic, Julius Keyl, Jens Kleesiek, Victor Alves, Xiaojun Chen, Behrus Hinrichs-Puladi, Jan Egger medRxiv — 2024-04-12 Medical ChatGPT – A systematic Meta-Review Jan Egger, Malik Sallam, Gijs Luijten, Christina Gsaxner, Antonio Pepe, Jens Kleesiek, Behrus Hinrichs-Puladi, Jianning Li medRxiv — 2024-04-03

2023

3D surgical instrument collection for computer vision and extended reality Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger Scientific Data — 2023-11 3D-COSI ~ 3D Collection of Surgical Instruments Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger 2023-10 Anatomy Completor: A Multi-class Completion Framework for 3D Anatomy Reconstruction Jianning Li, Antonio Pepe, Gijs Luijten, Christina Schwarz-Gsaxner, Jens Kleesiek, Jan Egger arXiv — 2023-09 Towards clinical applicability and computational efficiency in automatic cranial implant design: An overview of the AutoImplant 2021 cranial implant design challenge Jianning Li, David G. Ellis, Oldřich Kodym, Laurèl Rauschenbach, Christoph Rieß, Ulrich Sure, Karsten H. Wrede, Carlos M. Alvarez, Marek Wodzinski, Mateusz Daniol, Daria Hemmerling, Hamza Mahdi, Allison Clement, Evan Kim, Zachary Fishman, Cari M. Whyne, James G. Mainprize, Michael R. Hardisty, Shashwat Pathak, Chitimireddy Sindhura, Rama Krishna Sai S. Gorthi, Degala Venkata Kiran, Subrahmanyam Gorthi, Bokai Yang, Ke Fang, Xingyu Li, Artem Kroviakov, Lei Yu, Yuan Jin, Antonio Pepe, Christina Gsaxner, Adam Herout, Victor Alves, Michal Španěl, Michele R. Aizenberg, Jens Kleesiek, Jan Egger Medical Image Analysis — 2023-06 A web-based radiomics module for image feature extraction for tumor characterization Theresa Hübner, Aaron Berger, Daniel Wild, Jianning Li, Antonio Pepe, Christina Gsaxner, Yuan Jin, Gijs Luijten, Jens Kleesiek, Jan Egger Medical Imaging 2023: Imaging Informatics for Healthcare, Research, and Applications — 2023-04-10 The HoloLens in medicine: A systematic review and taxonomy Christina Gsaxner, Jianning Li, Antonio Pepe, Yuan Jin, Jens Kleesiek, Dieter Schmalstieg, Jan Egger Medical Image Analysis

2022

The HoloLens in Medicine: A systematic Review and Taxonomy Christina Gsaxner, Jianning Li, Antonio Pepe, Yuan Jin, Jens Kleesiek, Dieter Schmalstieg, Jan Egger arXiv — 2022-09 Medical Deep Learning – A systematic Meta-Review Jan Egger, Christina Gsaxner, Antonio Pepe, Kelsey L. Pomykala, Frederic Jonske, Manuel Kurz, Jianning Li, Jens Kleesiek Computer Methods and Programs in Biomedicine — 2022-05 Stochastic Modeling of Inhomogeneities in the Aortic Wall and Uncertainty Quantification using a Bayesian Encoder-Decoder Surrogate Sascha Ranftl, Malte Rolf-Pissarczyk, Gloria Wolkerstorfer, Antonio Pepe, Jan Egger, Wolfgang von der Linden, Gerhard A. Holzapfel 2022-02-21 AVT: Multicenter aortic vessel tree CTA dataset collection with ground truth segmentation masks Lukas Radl, Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Fen-hua Zhao, Jan Egger 2022-02 Sparse Convolutional Neural Networks for Medical Image Analysis Jianning Li, Christina Gsaxner, Antonio Pepe, Dieter Schmalstieg, Jens Kleesiek, Jan Egger 2022-02

2021

Inside-out instrument tracking for surgical navigation in augmented reality Christina Gsaxner, Jianning Li, Antonio Pepe, Dieter Schmalstieg, Jan Egger Proceedings of the 27th ACM Symposium on Virtual Reality Software and Technology — 2021-12-08 Learning to rearrange voxels in binary segmentation masks for smooth manifold triangulation Jianning Li, Antonio Pepe, Christina Gsaxner, Yuan Jin, Jan Egger Cranial Implant Design Challenge — 2021-12-03 MUG500+: Database of 500 high-resolution healthy human skulls and 29 craniotomy skulls and implants Jianning Li, Marcell Krall, Florian Trummer, Afaque Rafique Memon, Antonio Pepe, Christina Gsaxner, Yuan Jin, Xiaojun Chen, Hannes Deutschmann, Ulrike Zefferer 2021-12 Automated cross-sectional view selection in CT angiography of aortic dissections with uncertainty awareness and retrospective clinical annotations Antonio Pepe, Jan Egger, Marina Codari, Martin J. Willemink, Christina Gsaxner, Jianning Li, Peter M. Roth, Gabriel Mistelbauer, Dieter Schmalstieg, Dominik Fleischmann 2021-11-22 Deep learning—a first meta-survey of selected reviews across scientific disciplines, their commonalities, challenges and research impact Jan Egger, Antonio Pepe, Christina Gsaxner, Yuan Jin, Jianning Li, Roman Kern 2021-11-17 Automatic skull defect restoration and cranial implant generation for cranioplasty Jianning Li, Gord von Campe, Antonio Pepe, Christina Gsaxner, Enpeng Wang, Xiaojun Chen, Ulrike Zefferer, Martin Tödtling, Marcell Krall, Hannes Deutschmann 2021-10 Ai-based aortic vessel tree segmentation for cardiovascular diseases treatment: status quo Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Fen-hua Zhao, Jens Kleesiek, Alejandro F. Frangi, Jan Egger 2021-08-06 Deep learning and generative adversarial networks in oral and maxillofacial surgery Antonio Pepe, Gianpaolo Francesco Trotta, Christina Gsaxner, Antonio Brunetti, Giacomo Donato Cascarano, Vitoantonio Bevilacqua, Dinggang Shen, Jan Egger 2021-04-29 SkullBreak/SkullFix–Dataset for automatic cranial implant design and a benchmark for volumetric shape learning tasks Oldřich Kodym, Jianning Li, Antonio Pepe, Christina Gsaxner, Sasank Chilamkurthy, Jan Egger, Michal Španěl 2021-04 A cloud-based centerline algorithm for Studierfenster Christina Dionysio, Daniel Wild, Antonio Pepe, Christina Gsaxner, Jianning Li, Luis Alvarez, Jan Egger Medical Imaging 2021: Imaging Informatics for Healthcare, Research, and Applications — 2021-02-15 A patch-based-approach for aortic landmarking Michael Schmied, Antonio Pepe, Jan Egger Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging — 2021-02-15 A web client-based online DICOM browser and NRRD converter for Studierfenster Christopher A. Ramirez Bedoya, Daniel Wild, Antonio Pepe, Christina Gsaxner, Jianning Li, Jan Egger Medical Imaging 2021: Imaging Informatics for Healthcare, Research, and Applications — 2021-02-15 An online platform for automatic skull defect restoration and cranial implant design Jianning Li, Antonio Pepe, Christina Gsaxner, Jan Egger Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling — 2021-02-15 Deep learning and particle filter-based aortic dissection vessel tree segmentation Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Jan Egger Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging — 2021-02-15 Synthetic skull bone defects for automatic patient-specific craniofacial implant design Jianning Li, Christina Gsaxner, Antonio Pepe, Ana Morais, Victor Alves, Gord von Campe, Jürgen Wallner, Jan Egger 2021-01-29