@ IKIM AI-guided Therapies
DE University Medicine Essen — Institute for Artificial Intelligence in Medicine

Publications

These are the publications of the AI-guided Therapies group: every paper with a group member in its byline. The full list of the Medical Machine Learning group is on the MML publications page.

2026

A Multi-Site Label Trap in Shape-Based Endometriosis Detection: What Female Pelvic-Organ Shape Does (and Does Not) Encode Gijs Luijten, Merlin Engelke, Richard Ruppel, Jan Egger Joint Computer-Assisted Pelvic Imaging (CAPI) and Women’s Health (WOMEN) Workshops, MICCAI 2026 — 2026-10 Pelvic MRI Patient Verification with Foundation-Model Embeddings Richard Ruppel, Maximilian Lindholz, Charlie Hamm, Lynn Jeanette Savic, Robin Schmidt, Tillmann Arlt, Gijs Luijten, Leonard Stepansky, Daniel Bauer, Matthias Stefan May, Tobias Penzkofer Joint Computer-Assisted Pelvic Imaging (CAPI) and Women’s Health (WOMEN) Workshops, MICCAI 2026 — 2026-10 Einfluss von VR-Brillen als nicht-medikamentöse Intervention zur Reduktion von präoperativen Angstzuständen bei viszeralchirurgischen onkologischen Patient:innen vor Elektiveingriffen B. Gärtner, Laura Mazilescu, Jan Egger, Gijs Luijten, Ulf Peter Neumann, Sophia Marie-Therese Schmitz Zeitschrift für Gastroenterologie — 2026-08-27 On Effective Multi-class Skin Lesion Classification and Skin-Tone Bias Quantification Alexander Brehmer, Fabian Hörst, Maurice Mölleken, Lukas Heine, Jan Egger, Jens Kleesiek Proceedings of 2025 International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2025) — 2026-08 Large language models enable prognostic stratification of cancer patients using real-world clinical notes Niklas Kiermeyer, Tim Lenfers, Amin Dada, Julian Friedrich, Sameh Khattab, Eric Knop, Jan Egger, Markus Pauly, Andreas Jung, Grégoire Montavon, Jens T. Siveke, Marcel Wiesweg, Stefan Kasper-Virchow, Ulf Peter Neumann, Frederick Klauschen, Sylvia Hartmann, Martin Schuler, Philipp Keyl, Jens Kleesiek, Julius Keyl PLOS Digital Health — 2026-07 ++nnU-Net: Scaling nnU-Net with Prefix-Based Data Augmentation Ana Sofia Ferreira Santos, André Ferreira, Gijs Luijten, Naida Solak, Lisle Faray de Paiva, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Victor Alves arXiv — 2026-06 VS-DDPM: Efficient Low-Cost Diffusion Model for Medical Modality Translation Nikoo Moradi, Gijs Luijten, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger, André Ferreira arXiv — 2026-04-24 Achieving Over 10× Faster Sample Generation with Conditional Denoising Diffusion André Ferreira, Gijs Luijten, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger Segmentation, Classification, and Synthesis for Brain Tumors and Traumatic Brain Injuries — 2026-04 Explainable AI Predicts Hematoxicity from Cancer Treatment Using Multimodal Real-World Data Julius Keyl, Philipp Keyl, Tim Lenfers, René Hosch, Niklas Kiermeyer, Simon Schallenberg, Moon Kim, Sebastian Bauer, Nikolaos Bechrakis, Michael Forsting, Dagmar Führer-Sakel, Sied Kebir, Viktor Grünwald, Boris Hadaschik, Johannes Haubold, Ken Herrmann, Stefan Kasper-Virchow, Rainer Kimmig, Stephan Lang, Tienush Rassaf, Alexander Rösch, Dirk Schadendorf, Jens T. Siveke, Martin Stuschke, Ulrich Sure, Matthias Totzeck, Anja Welt, Marcel Wiesweg, Jan Egger, Sylvia Hartmann, Grégoire Montavon, Felix Nensa, Klaus-Robert Müller, Martin Schuler, Jens Kleesiek, Frederick Klauschen medRxiv — 2026-04 OncoVR - Virtual Reality in Oncology for Patient-centered Care: A Systematic Review and Meta-Analysis Miriam Balzer, Abdelrahman Elsakka, Gijs Luijten, Katrin Schormann, Slobodan Jovic, Monja Gerigk, Laura Mazilescu, Sophia Marie-Therese Schmitz, Julius Keyl, Stefan Liszio, Oliver Basu, Beata Maria Goraus, Stefan Kasper-Virchow, Jens Kleesiek, Behrus Hinrichs-Puladi, Jan Egger Current Oncology Reports — 2026-03-26 Usability Study of Augmented Reality Visualization Modalities on Localization Accuracy in the Head and Neck: Randomized Crossover Trial Yao Li, Gijs Luijten, Christina Gsaxner, Kim Grunert, Alexis Bader, Frank Hölzle, Rainer Röhrig, Matías de la Fuente, Jan Egger, Kunpeng Xie, Behrus Hinrichs-Puladi JMIR Serious Games — 2026-01-13 Deep Learning-derived Sarcopenia Marker Predicts Benefit from Anti-EGFR Therapy in Patients with RAS Wild-Type Metastatic Colorectal Cancer Julius Keyl, René Hosch, Fabian Hörst, Philipp Keyl, Amin Dada, Johannes Haubold, Jannis Straus, Jan Egger, Arndt Stahler, Annika Kurreck, Alexej Ballhausen, Sebastian Stintzing, Stefan Frühauf, Lothar Müller, Annabel H. S. Alig, Tanja Trarbach, Sylvia Hartmann, Felix Nensa, Jens Kleesiek, Stefan Kasper-Virchow, Martin Schuler, Dominik P. Modest Clinical Cancer Research — 2026-01-05 From screen to space: evaluating Siemens’ Cinematic Reality application for medical imaging on the Apple Vision Pro Gijs Luijten, Lisle Faray de Paiva, Sebastian Krueger, Alexander Brost, Laura Mazilescu, Ana Sofia Ferreira Santos, Peter F. Hoyer, Jens Kleesiek, Sophia Marie-Therese Schmitz, Ulf Peter Neumann, Jan Egger Frontiers in Virtual Reality — 2026-01-05

2025

Automated CT-based sarcopenia assessment for risk stratification of patients undergoing colorectal cancer resection Johannes Vogelsang, Gernot Pucher, Fabian Hörst, René Hosch, Johannes Haubold, Philipp Keyl, Christopher Sauer, David Albers, Peter Markus, Jan P. Neuhaus, Andreas D. Rink, Jürgen Treckmann, Ulf Peter Neumann, Kai Nassenstein, Michael Forsting, Hideo A. Baba, Jan Egger, Stefan Kasper-Virchow, Martin Schuler, Felix Nensa, Jens Kleesiek, Julius Keyl Clinical Surgical Oncology — 2025-11 Shape in Medical Imaging: International Workshop, ShapeMI 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings Christian Wachinger, Gijs Luijten, Shireen Elhabian, Karthik Gopinath, Jan Egger Springer Nature — 2025-10-04 Deep Learning-Based Semantic Segmentation for Real-Time Kidney Imaging and Measurements with Augmented Reality-Assisted Ultrasound Gijs Luijten, Roberto Scardigno, Lisle Faray de Paiva, Peter F. Hoyer, Jens Kleesiek, Domenico Buongiorno, Vitoantonio Bevilacqua, Jan Egger arXiv — 2025-06-30 Beyond the Desktop: XR-Driven Segmentation with Meta Quest 3 and MX Ink Lisle Faray de Paiva, Gijs Luijten, Ana Sofia Ferreira Santos, Moon Kim, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger arXiv — 2025-06-05 Spacewalker: Traversing Representation Spaces for Fast Interactive Exploration and Annotation of Unstructured Data Lukas Heine, Fabian Hörst, Jana Fragemann, Gijs Luijten, Jan Egger, Fin Hendrik Bahnsen, Saquib Sarfraz, Jens Kleesiek, Constantin Seibold, M. Saquib Sarfraz Machine Learning Methods in Visualisation for Big Data (EuroVis Workshop) — 2025-05-26 Digital twins for the era of personalized surgery Yosra Magdi Mekki, Gijs Luijten, Elisabet Hagert, Sirajeddin Belkhair, Chris Varghese, Junaid Qadir, Barry Solaiman, Muhammad Bilal, Jaghtar Dhanda, Jan Egger, Jun Deng, Vikas Khanduja, Alejandro F. Frangi, Susu M. Zughaier, Mitchell A. Stotland npj Digital Medicine — 2025-05-15 Performing the HINTS-exam using a mixed-reality head-mounted display in patients with acute vestibular syndrome: a feasibility study Nadia Sadok, Gijs Luijten, Fin Hendrik Bahnsen, Christina Gsaxner, Lorenz Peters, Theda Eichler, Theresa Rombach, Stephan Lang, Sameh Khattab, Jens Kleesiek, Dagny Holle, Moritz Meyer, Jan Egger Frontiers in Neurology — 2025-05 Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment: Status Quo Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Yuxuan Chen, Behrus Hinrichs-Puladi, Fen-hua Zhao, Kelsey L. Pomykala, Jens Kleesiek, Alejandro F. Frangi, Jan Egger ACM Comput. Surv. — 2025-04 Is DeepSeek-R1 a Game Changer in Healthcare? - A Seed Review Jan Egger, Lisle Faray de Paiva, Gijs Luijten, Chayakrit Krittanawong, Julius Keyl, Malik Sallam, Behrus Hinrichs-Puladi TechRxiv — 2025-03-24 Comparative Analysis of nnUNet and MedNeXt for Head and Neck Tumor Segmentation in MRI-Guided Radiotherapy Nikoo Moradi, André Ferreira, Behrus Hinrichs-Puladi, Jens Kleesiek, Emad Fatemizadeh, Gijs Luijten, Victor Alves, Jan Egger Head and Neck Tumor Segmentation for MR-Guided Applications — 2025-03-03 Virtual reality support during systemic cancer therapy to improve anxiety/depressive symptoms and reduce toxicity in patients with gastrointestinal cancers—OncoVR Stefan Kasper-Virchow, Stefan Liszio, Katrin Schormann, Monja Gerigk, Slobodan Jovic, Oliver Basu, K. Kostbade, Beata Maria Goraus, Abdelrahman Elsakka, Behrus Hinrichs-Puladi, Jens Kleesiek, Martin Schuler, Gijs Luijten, Jan Egger ESMO Gastrointestinal Oncology — 2025-03 How does DeepSeek-R1 perform on USMLE? Lisle Faray de Paiva, Gijs Luijten, Behrus Hinrichs-Puladi, Jan Egger medRxiv — 2025-02-10 Decoding pan-cancer treatment outcomes using multimodal real-world data and explainable artificial intelligence Julius Keyl, Philipp Keyl, Grégoire Montavon, René Hosch, Alexander Brehmer, Liliana Mochmann, Philipp Jurmeister, Gabriel Dernbach, Moon Kim, Sven Koitka, Sebastian Bauer, Nikolaos Bechrakis, Michael Forsting, Dagmar Führer-Sakel, Martin Glas, Viktor Grünwald, Boris Hadaschik, Johannes Haubold, Ken Herrmann, Stefan Kasper-Virchow, Rainer Kimmig, Stephan Lang, Tienush Rassaf, Alexander Rösch, Dirk Schadendorf, Jens T. Siveke, Martin Stuschke, Ulrich Sure, Matthias Totzeck, Anja Welt, Marcel Wiesweg, Hideo A. Baba, Felix Nensa, Jan Egger, Klaus-Robert Müller, Martin Schuler, Frederick Klauschen, Jens Kleesiek Nature Cancer — 2025-02 GBM-Reservoir: Brain tumor (Glioblastoma Multiforme) MRI dataset collection with ground truth segmentation masks Naida Solak, André Ferreira, Gijs Luijten, Behrus Hinrichs-Puladi, Victor Alves, Jan Egger Data in Brief — 2025-02 MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque Rafique Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Soumick Chatterjee, Andreas Nürnberger, Joao Pedrosa, Carlos Ferreira, Guilherme Aresta, Antonio Cunha, Aurelio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin Hendrik Bahnsen, Constantin Seibold, Alexander Jaus, Ana Sofia Ferreira Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon Kim, Shireen Elhabian, Hans Lamecker, Dzenan Zukic, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Ping Luo, Björn Menze, Mauricio Reyes, Christos Davatzikos, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Zongwei Zhou, Jiancheng Yang, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Viet Duc Vu, Christopher Schlachta, Sandrine De Ribaupierre, Rajnikant Patel, Roy Eagleson, Heinrich Mächler, Arcot Sowmya, Vincenzo Ferrari, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Hauke Heidemeyer, Timo van Meegdenburg, Zdravko Marinov, Paul F. Jäger, Rainer Stiefelhagen, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Thomas M. Deserno, Pascal Fua, Alan L. Yuille Biomedical Engineering / Biomedizinische Technik — 2025-02 Why does my medical AI look at pictures of birds? Exploring the efficacy of transfer learning across domain boundaries Frederic Jonske, Moon Kim, Enrico Nasca, Janis Evers, Johannes Haubold, René Hosch, Felix Nensa, Michael Kamp, Constantin Seibold, Jan Egger, Jens Kleesiek Computer Methods and Programs in Biomedicine

2024

Efficient MedSAMs: Segment Anything in Medical Images on Laptop Jun Ma, Feifei Li, Sumin Kim, Reza Asakereh, Bao-Hiep Le, Dang-Khoa Nguyen-Vu, Alexander Pfefferle, Muxin Wei, Ruochen Gao, Donghang Lyu, Songxiao Yang, Lennart Purucker, Zdravko Marinov, Marius Staring, Haisheng Lu, Thuy Thanh Dao, Xincheng Ye, Zhi Li, Gianluca Brugnara, Philipp Vollmuth, Martha Foltyn-Dumitru, Jaeyoung Cho, Mustafa Ahmed Mahmutoglu, Martin Bendszus, Irada Pflüger, Aditya Rastogi, Dong Ni, Xin Yang, Guang-Quan Zhou, Kaini Wang, Nicholas Heller, Nikolaos Papanikolopoulos, Christopher Weight, Yubing Tong, Jayaram K Udupa, Cahill J. Patrick, Yaqi Wang, Yifan Zhang, Francisco Contijoch, Elliot McVeigh, Xin Ye, Shucheng He, Robert Haase, Thomas Pinetz, Alexander Radbruch, Inga Krause, Erich Kobler, Jian He, Yucheng Tang, Haichun Yang, Yuankai Huo, Gongning Luo, Kaisar Kushibar, Jandos Amankulov, Dias Toleshbayev, Amangeldi Mukhamejan, Jan Egger, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Shohei Fujita, Tomohiro Kikuchi, Benedikt Wiestler, Jan Stefan Kirschke, Ezequiel de la Rosa, Federico Bolelli, Luca Lumetti, Costantino Grana, Kunpeng Xie, Guomin Wu, Behrus Hinrichs-Puladi, Carlos Martín-Isla, Karim Lekadir, Victor M. Campello, Wei Shao, Wayne Brisbane, Hongxu Jiang, Hao Wei, Wu Yuan, Shuangle Li, Yuyin Zhou, Bo Wang arXiv — 2024-12-20 Brain Tumour Removing and Missing Modality Generation using 3D WDM André Ferreira, Gijs Luijten, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger arXiv — 2024-12 Deep Interactive Segmentation of Medical Images: A Systematic Review and Taxonomy Zdravko Marinov, Paul F. Jäger, Jan Egger, Jens Kleesiek, Rainer Stiefelhagen IEEE Transactions on Pattern Analysis and Machine Intelligence — 2024-12 Improved Multi-Task Brain Tumour Segmentation with Synthetic Data Augmentation André Ferreira, Tiago Jesus, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger arXiv — 2024-12 Results from the autoPET challenge on fully automated lesion segmentation in oncologic PET/CT imaging Sergios Gatidis, Marcel Früh, Matthias P. Fabritius, Sijing Gu, Konstantin Nikolaou, Christian la Fougère, Jin Ye, Junjun He, Yige Peng, Lei Bi, Jun Ma, Bo Wang, Jia Zhang, Yukun Huang, Lars Heiliger, Zdravko Marinov, Rainer Stiefelhagen, Jan Egger, Jens Kleesiek, Ludovic Sibille, Lei Xiang, Simone Bendazzoli, Mehdi Astaraki, Michael Ingrisch, Clemens C. Cyran, Thomas Küstner Nature Machine Intelligence — 2024-10 Is the Apple Vision Pro the Ultimate Display? A First Perspective and Survey on Entering the Wonderland of Precision Medicine Jan Egger, Christina Gsaxner, Gijs Luijten, Jianxu Chen, Xiaojun Chen, Jiang Bian, Jens Kleesiek, Behrus Hinrichs-Puladi JMIR Serious Games — 2024-09-18 Establishing Medical Intelligence - Leveraging FHIR to Improve Clinical Management: a retrospective cohort and clinical implementation study Alexander Brehmer, Christopher Sauer, Jayson Salazar Rodríguez, Kelsey Herrmann, Moon Kim, Julius Keyl, Fin Hendrik Bahnsen, Benedikt Frank, Martin Köhrmann, Tienush Rassaf, Amir-Abbas Mahabadi, Boris Hadaschik, Christopher Darr, Ken Herrmann, Susanne Tan, Jan Buer, Thorsten Brenner, Hans Christian Reinhardt, Felix Nensa, Michael Gertz, Jan Egger, Jens Kleesiek Journal of Medical Internet Research — 2024-08 MultiAR: A Multi-User Augmented Reality Platform for Biomedical Education Markus Perz, Gijs Luijten, Jens Kleesiek, Dieter Schmalstieg, Jan Egger, Christina Gsaxner 2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) — 2024-07-15 Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till Braunschweig, Jianning Li, Jens Kleesiek, Rainer Röhrig, Jan Egger, Bastian Leibe, Frank Hölzle, Alexander Hermans, Behrus Hinrichs-Puladi Computer Methods and Programs in Biomedicine — 2024-07 How we won BraTS 2023 Adult Glioma challenge? Just faking it! Enhanced Synthetic Data Augmentation and Model Ensemble for brain tumour segmentation André Ferreira, Naida Solak, Jianning Li, Philipp Dammann, Jens Kleesiek, Victor Alves, Jan Egger arXiv — 2024-07 Der mobile Patient Jan Egger, Jens Kleesiek Human Hospital: wertschätzend. sinnstiftend. menschlich. — 2024-06 Multisensory Extended Reality Applications Offer Benefits for Volumetric Biomedical Image Analysis in Research and Medicine Kathrin Krieger, Jan Egger, Jens Kleesiek, Matthias Gunzer, Jianxu Chen Journal of Imaging Informatics in Medicine — 2024-06 Tumor likelihood estimation on MRI prostate data by utilizing k-Space information Moritz Rempe, Fabian Hörst, Constantin Seibold, Boris Hadaschik, Marco Schlimbach, Jan Egger, Kevin Kröninger, Felix Breuer, Martin Blaimer, Jens Kleesiek arXiv — 2024-06 A Baseline Solution for the ISBI 2024 Dreaming Challenge Timo van Meegdenburg, Gijs Luijten, Jens Kleesiek, Behrus Hinrichs-Puladi, André Ferreira, Jan Egger, Christina Gsaxner 2024 IEEE International Symposium on Biomedical Imaging (ISBI) — 2024-05-27 Generalisation of Segmentation Using Generative Adversarial Networks André Ferreira, Gijs Luijten, Behrus Hinrichs-Puladi, Jens Kleesiek, Victor Alves, Jan Egger 2024 IEEE International Symposium on Biomedical Imaging (ISBI) — 2024-05-27 Deep Learning-based Point Cloud Registration for Augmented Reality-guided Surgery Maximilian Weber, Daniel Wild, Jens Kleesiek, Jan Egger, Christina Gsaxner arXiv — 2024-05 Eye tracker-based differentiation of causes of acute Vertigo: A mobile approach for faster and more accurate triage and diagnosis Nadia Sadok, Gijs Luijten, Fin Hendrik Bahnsen, Christina Gsaxner, Lorenz Peters, Theda Eichler, Theresa Rombach, Constantin Seibold, Stephan Lang, Sameh Khattab, Jan Egger, Dagny Holle-Lee, Moritz Meyer, Jens Kleesiek Laryngo-Rhino-Otologie — 2024-04-19 Designing and Implementing an Interactive Cloud Platform for Teaching Machine Learning with Medical Data Frederic Jonske, Kevin Osthues, Amin Dada, Enrico Nasca, Jana Fragemann, Julian Alff, Oleh Bakumenko, Marcel Birnbach, Maxim Kondratenko, Lars Reinike, Benjamin Schulz, Fabian Siethoff, Tobias Simon, Joey Wang, Nils Zhang, Fin Hendrik Bahnsen, Jan Egger, Moon Kim, Maria Lymbery, Jens Kleesiek, Johannes Kraus Artificial Intelligence for Security: Enhancing Protection in a Changing World — 2024-04-17 A Meta-Review about Medical 3D Printing Melissa Meister, Gijs Luijten, Christina Gsaxner, Kunpeng Xie, Lennart J. Gruber, Jianning Li, Antonio Pepe, Yao Li, Ashkan Rashad, Constantin Seibold, Fin Hendrik Bahnsen, Moon Kim, Nino Fijačko, Frank Hölzle, Malik Sallam, Rainer Röhrig, Gregor Štiglic, Julius Keyl, Jens Kleesiek, Victor Alves, Xiaojun Chen, Behrus Hinrichs-Puladi, Jan Egger medRxiv — 2024-04-12 Medical ChatGPT – A systematic Meta-Review Jan Egger, Malik Sallam, Gijs Luijten, Christina Gsaxner, Antonio Pepe, Jens Kleesiek, Behrus Hinrichs-Puladi, Jianning Li medRxiv — 2024-04-03 GAN-based generation of realistic 3D volumetric data: A systematic review and taxonomy André Ferreira, Jianning Li, Kelsey L. Pomykala, Jens Kleesiek, Victor Alves, Jan Egger Medical Image Analysis — 2024-04 A Semi-automatic Cranial Implant Design Tool Based on Rigid ICP Template Alignment and Voxel Space Reconstruction Michael Lackner, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Jianning Li arXiv — 2024-03 Advancing Healthcare Through Open Science: StudierFenster and MedShapeNet Christina Gsaxner, Gijs Luijten, Jianning Li, Jens Kleesiek, Behrus Hinrichs-Puladi, Jan Egger 2024-03 Accelerating Artificial Intelligence-based Whole Slide Image Analysis with an Optimized Preprocessing Pipeline Fabian Hörst, Sajad H. Schaheer, Giulia Baldini, Fin Hendrik Bahnsen, Jan Egger, Jens Kleesiek Bildverarbeitung für die Medizin 2024 — 2024-02-20 Deep PCCT: Photon Counting Computed Tomography Deep Learning Applications Review Ana Carolina Alves, André Ferreira, Gijs Luijten, Jens Kleesiek, Behrus Hinrichs-Puladi, Jan Egger, Victor Alves arXiv — 2024-02 Diminished Reality for Emerging Applications in Medicine through Inpainting Christina Gsaxner, Shohei Mori, Gijs Luijten, Viet Duc Vu, Timo van Meegdenburg, Gabriele A. Krombach, Jens Kleesiek, Eck Ulrich, Nassir Navab, Yan Guo, Xiaojun Chen, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger 2024-02 Response to the comment on “The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review” Behrus Hinrichs-Puladi, Christina Gsaxner, Jens Kleesiek, Frank Hölzle, Rainer Röhrig, Jan Egger International Journal of Oral and Maxillofacial Surgery — 2024-02 What is Diminished Virtuality? A Directional and Layer-Based Taxonomy for the Reality-Virtuality Continuum Jan Egger, Christina Gsaxner, Jens Kleesiek, Behrus Hinrichs-Puladi JMIR XR and Spatial Computing — 2024-01-31 CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till Braunschweig, Jianning Li, Jens Kleesiek, Rainer Röhrig, Jan Egger, Bastian Leibe, Frank Hölzle, Alexander Hermans, Behrus Hinrichs-Puladi Zenodo — 2024-01-26 Multilingual Natural Language Processing Model for Radiology Reports -- The Summary is all you need! Mariana Lindo, Ana Sofia Ferreira Santos, André Ferreira, Jianning Li, Gijs Luijten, Gustavo Correia, Moon Kim, Benedikt Michael Schaarschmidt, Cornelius Deuschl, Johannes Haubold, Jens Kleesiek, Jan Egger, Victor Alves arXiv — 2024-01-13 ChatGPT in healthcare: A taxonomy and systematic review Jianning Li, Amin Dada, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger Computer Methods and Programs in Biomedicine FootCapture: Towards an AR-based System for 3D Foot Object Acquisition through Photogrammetry Valentin Khan-Blouki, Franziska Seiz, Nicolas Walter, Alexander Jaus, Zdravko Marinov, Gijs Luijten, Jan Egger, Constantin Seibold, Dirk Solte, Jens Kleesiek Medical Imaging with Deep Learning (MIDL) k-strip: A novel segmentation algorithm in k-space for the application of skull stripping Moritz Rempe, Florian Mentzel, Kelsey L. Pomykala, Johannes Haubold, Felix Nensa, Kevin Kröninger, Jan Egger, Jens Kleesiek Computer Methods and Programs in Biomedicine Lean Study Host: Towards an Automated Pipeline for Multi-Center Study Hosting Lukas Heine, Fabian Hörst, Enrico Nasca, Jens T. Siveke, Jan Egger, Moon Kim, Fin Hendrik Bahnsen, Jens Kleesiek Proceedings of the 57th Hawaii International Conference on System Sciences

2023

3D surgical instrument collection for computer vision and extended reality Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger Scientific Data — 2023-11 On the Impact of Cross-Domain Data on German Language Models Amin Dada, Aokun Chen, Cheng Peng, Kaleb Smith, Ahmad Idrissi-Yaghir, Constantin Seibold, Jianning Li, Lars Heiliger, Christoph M. Friedrich, Daniel Truhn, Jan Egger, Jiang Bian, Jens Kleesiek, Yonghui Wu 2023-10-11 3D-COSI ~ 3D Collection of Surgical Instruments Gijs Luijten, Christina Gsaxner, Jianning Li, Antonio Pepe, Narmada Ambigapathy, Moon Kim, Xiaojun Chen, Jens Kleesiek, Frank Hölzle, Behrus Hinrichs-Puladi, Jan Egger 2023-10 Decoding pan-cancer treatment outcomes using multimodal real-world data and explainable artificial intelligence Julius Keyl, Philipp Keyl, Grégoire Montavon, René Hosch, Alexander Brehmer, Liliana Mochmann, Philipp Jurmeister, Gabriel Dernbach, Moon Kim, Sven Koitka, Sebastian Bauer, Nikolaos Bechrakis, Michael Forsting, Dagmar Führer-Sakel, Martin Glas, Viktor Grünwald, Boris Hadaschik, Johannes Haubold, Ken Herrmann, Stefan Kasper-Virchow, Rainer Kimmig, Tienush Rassaf, Alexander Rösch, Dirk Schadendorf, Jens T. Siveke, Martin Stuschke, Ulrich Sure, Matthias Totzeck, Anja Welt, Marcel Wiesweg, Hideo A. Baba, Felix Nensa, Jan Egger, Klaus-Robert Müller, Martin Schuler, Frederick Klauschen, Jens Kleesiek medRxiv — 2023-10 The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review Behrus Hinrichs-Puladi, Christina Gsaxner, Jens Kleesiek, Frank Hölzle, Rainer Röhrig, Jan Egger International Journal of Oral and Maxillofacial Surgery — 2023-10 Anatomy Completor: A Multi-class Completion Framework for 3D Anatomy Reconstruction Jianning Li, Antonio Pepe, Gijs Luijten, Christina Schwarz-Gsaxner, Jens Kleesiek, Jan Egger arXiv — 2023-09 Improvement in Disease Diagnosis in Computed Tomography Images by Correlating Organ Volumes with Disease Occurrences in Humans Timo van Meegdenburg, Jens Kleesiek, Jan Egger, Sören Perrey BioMedInformatics — 2023-09 Virtual Reality, Augmented Reality, Augmented Virtuality, or Mixed Reality in Cardiopulmonary Resuscitation: Which Extended Reality am I Using for Teaching Adult Basic Life Support? Nino Fijačko, Špela Metličar, Jens Kleesiek, Jan Egger, Todd P Chang Resuscitation — 2023-09 Apple Vision Pro for Healthcare: "The Ultimate Display"? Jan Egger, Christina Gsaxner, Xiaojun Chen, Jiang Bian, Jens Kleesiek, Behrus Hinrichs-Puladi arXiv — 2023-08 Histology-Based Prediction of Therapy Response to Neoadjuvant Chemotherapy for Esophageal and Esophagogastric Junction Adenocarcinomas Using Deep Learning Fabian Hörst, Saskia Ting, Sven-Thorsten Liffers, Kelsey L. Pomykala, Katja Steiger, Markus Albertsmeier, Martin K. Angele, Sylvie Lorenzen, Michael Quante, Wilko Weichert, Jan Egger, Jens T. Siveke, Jens Kleesiek JCO Clinical Cancer Informatics — 2023-08 FAM: Relative Flatness Aware Minimization Linara Adilova, Amr Abourayya, Jianning Li, Amin Dada, Henning Petzka, Jan Egger, Jens Kleesiek, Michael Kamp Topological, Algebraic and Geometric Learning Workshops 2023 — 2023-07-28 Information extraction from weakly structured radiological reports with natural language queries Amin Dada, Tim Leon Ufer, Moon Kim, Max Hasin, Nicola Spieker, Michael Forsting, Felix Nensa, Jan Egger, Jens Kleesiek European Radiology — 2023-07 Open-source skull reconstruction with MONAI Jianning Li, André Ferreira, Behrus Hinrichs-Puladi, Victor Alves, Michael Kamp, Moon Kim, Felix Nensa, Jens Kleesiek, Seyed-Ahmad Ahmadi, Jan Egger SoftwareX — 2023-07 CellViT: Vision Transformers for Precise Cell Segmentation and Classification Fabian Hörst, Moritz Rempe, Lukas Heine, Constantin Seibold, Julius Keyl, Giulia Baldini, Selma Ugurel, Jens T. Siveke, Barbara Grünwald, Jan Egger, Jens Kleesiek arXiv — 2023-06 Establishing Medical Intelligence - Leveraging FHIR to Improve Clinical Management Alexander Brehmer, Christopher Sauer, Jayson Salazar, Kelsey Hermmann, Moon Kim, Julius Keyl, Fin Hendrik Bahnsen, Benedikt Frank, Martin Köhrmann, Tienush Rassaf, Amir-Abbas Mahabadi, Boris Hadaschik, Christopher Darr, Ken Herrmann, Susanne Tan, Jan Buer, Thorsten Brenner, Hans Christian Reinhardt, Felix Nensa, Michael Gertz, Jan Egger, Jens Kleesiek 2023-06 The autoPET challenge: Towards fully automated lesion segmentation in oncologic PET/CT imaging Sergios Gatidis, Marcel Früh, Matthias P. Fabritius, Sijing Gu, Christian la Fougère, Jin Ye, Junjun He, Yige Peng, Lei Bi, Jun Ma, Bo Wang, Jia Zhang, Yukun Huang, Lars Heiliger, Zdravko Marinov, Rainer Stiefelhagen, Jan Egger, Jens Kleesiek, Ludovic Sibille, Lei Xiang, Simone Bendazzoli, Mehdi Astaraki, Bernhard Schölkopf, Michael Ingrisch, Clemens C. Cyran, Thomas Küstner 2023-06 Towards clinical applicability and computational efficiency in automatic cranial implant design: An overview of the AutoImplant 2021 cranial implant design challenge Jianning Li, David G. Ellis, Oldřich Kodym, Laurèl Rauschenbach, Christoph Rieß, Ulrich Sure, Karsten H. Wrede, Carlos M. Alvarez, Marek Wodzinski, Mateusz Daniol, Daria Hemmerling, Hamza Mahdi, Allison Clement, Evan Kim, Zachary Fishman, Cari M. Whyne, James G. Mainprize, Michael R. Hardisty, Shashwat Pathak, Chitimireddy Sindhura, Rama Krishna Sai S. Gorthi, Degala Venkata Kiran, Subrahmanyam Gorthi, Bokai Yang, Ke Fang, Xingyu Li, Artem Kroviakov, Lei Yu, Yuan Jin, Antonio Pepe, Christina Gsaxner, Adam Herout, Victor Alves, Michal Španěl, Michele R. Aizenberg, Jens Kleesiek, Jan Egger Medical Image Analysis — 2023-06 Valuing vicinity: Memory attention framework for context-based semantic segmentation in histopathology Oliver Ester, Fabian Hörst, Constantin Seibold, Julius Keyl, Saskia Ting, Nikolaos Vasileiadis, Jessica Schmitz, Philipp Ivanyi, Viktor Grünwald, Jan Hinrich Bräsen, Jan Egger, Jens Kleesiek Computerized Medical Imaging and Graphics — 2023-05 A web-based radiomics module for image feature extraction for tumor characterization Theresa Hübner, Aaron Berger, Daniel Wild, Jianning Li, Antonio Pepe, Christina Gsaxner, Yuan Jin, Gijs Luijten, Jens Kleesiek, Jan Egger Medical Imaging 2023: Imaging Informatics for Healthcare, Research, and Applications — 2023-04-10 An Opinion on ChatGPT in Health Care—Written by Humans Only Jens Kleesiek, Yonghui Wu, Gregor Štiglic, Jan Egger, Jiang Bian Journal of Nuclear Medicine — 2023-04 Evaluation of thresholding methods for the quantifcation of 68Ga‑PSMA‑11 PET molecular tumor volume and their efect on survival prediction in patients with advanced prostate cancer undergoing 177Lu‑PSMA‑617 radioligand therapy Moon Kim, Robert Seifert, Jana Fragemann, David Kersting, Jacob M. Murray, Frederic Jonske, Kelsey L. Pomykala, Jan Egger, Wolfgang P. Fendler, Ken Herrmann, Jens Kleesiek European Journal of Nuclear Medicine and Molecular Imaging — 2023-03-02 ChatGPT in Healthcare: A Taxonomy and Systematic Review Jianning Li, Amin Dada, Jens Kleesiek, Jan Egger medRxiv — 2023-03 Histology-based Prediction of Therapy Response to Neoadjuvant Chemotherapy for Esophageal and Esophagogastric Junction Adenocarcinomas Using Deep Learning Fabian Hörst, Saskia Ting, Sven-Thorsten Liffers, Kelsey L. Pomykala, Katja Steiger, Markus Albertsmeier, Marting K. Angele, Sylvie Lorenzen, Michael Quante, Wilko Weichert, Jan Egger, Jens T. Siveke, Jens Kleesiek medRxiv — 2023-03 The HoloLens in medicine: A systematic review and taxonomy Christina Gsaxner, Jianning Li, Antonio Pepe, Yuan Jin, Jens Kleesiek, Dieter Schmalstieg, Jan Egger Medical Image Analysis

2022

Radiomics in Head and Neck Cancer Outcome Predictions Maria Gonçalves, Christina Gsaxner, André Ferreira, Jianning Li, Behrus Hinrichs-Puladi, Jens Kleesiek, Jan Egger, Victor Alves Diagnostics — 2022-11-08 Open-Source Skull Reconstruction with MONAI Jianning Li, André Ferreira, Behrus Hinrichs-Puladi, Victor Alves, Michael Kamp, Moon Kim, Felix Nensa, Jens Kleesiek, Seyed-Ahmad Ahmadi, Jan Egger arXiv — 2022-11 'A net for everyone': fully personalized and unsupervised neural networks trained with longitudinal data from a single patient Christian Strack, Kelsey L. Pomykala, Heinz-Peter Schlemmer, Jan Egger, Jens Kleesiek arXiv — 2022-10 Valuing Vicinity: Memory attention framework for context-based semantic segmentation in histopathology Oliver Ester, Fabian Hörst, Constantin Seibold, Julius Keyl, Saskia Ting, Nikolaos Vasileiadis, Jessica Schmitz, Philipp Ivanyi, Viktor Grünwald, Jan Hinrich Bräsen, Jan Egger, Jens Kleesiek arXiv — 2022-10 AutoPET Challenge: Combining nn-Unet with Swin UNETR Augmented by Maximum Intensity Projection Classifier Lars Heiliger, Zdravko Marinov, André Ferreira, Jana Fragemann, Jacob M. Murray, David Kersting, Rainer Stiefelhagen, Jens Kleesiek arXiv — 2022-09 The HoloLens in Medicine: A systematic Review and Taxonomy Christina Gsaxner, Jianning Li, Antonio Pepe, Yuan Jin, Jens Kleesiek, Dieter Schmalstieg, Jan Egger arXiv — 2022-09 Training beta-VAE by Aggregating a Learned Gaussian Posterior with a Decoupled Decoder Jianning Li, Jana Fragemann, Seyed-Ahmad Ahmadi, Jens Kleesiek, Jan Egger arXiv — 2022-09 Deep Learning–driven classification of external DICOM studies for PACS archiving Frederic Jonske, Maximilian Dederichs, Moon Kim, Julius Keyl, Jan Egger, Lale Umutlu, Michael Forsting, Felix Nensa, Jens Kleesiek European Radiology — 2022-07 GAN-based generation of realistic 3D data: A systematic review and taxonomy André Ferreira, Jianning Li, Kelsey L. Pomykala, Jens Kleesiek, Victor Alves, Jan Egger arXiv — 2022-07 Generation of Synthetic Rat Brain MRI Scans with a 3D Enhanced Alpha Generative Adversarial Network André Ferreira, Ricardo Magalhães, Sébastien Mériaux, Victor Alves Applied Sciences — 2022-05-11 k-strip: A novel segmentation algorithm in k-space for the application of skull stripping Moritz Rempe, Florian Mentzel, Kelsey L. Pomykala, Johannes Haubold, Felix Nensa, Kevin Kröninger, Jan Egger, Jens Kleesiek 2022-05 Medical Deep Learning – A systematic Meta-Review Jan Egger, Christina Gsaxner, Antonio Pepe, Kelsey L. Pomykala, Frederic Jonske, Manuel Kurz, Jianning Li, Jens Kleesiek Computer Methods and Programs in Biomedicine — 2022-05 Generation of Synthetic Data: A Generative Adversarial Networks Approach André Ferreira, Ricardo Magalhães, Victor Alves Big Data Analytics and Artificial Intelligence in the Healthcare Industry — 2022-04 Review of Disentanglement Approaches for Medical Applications: Towards Solving the Gordian Knot of Generative Models in Healthcare Jana Fragemann, Lynton Ardizzone, Jan Egger, Jens Kleesiek 2022-03 Stochastic Modeling of Inhomogeneities in the Aortic Wall and Uncertainty Quantification using a Bayesian Encoder-Decoder Surrogate Sascha Ranftl, Malte Rolf-Pissarczyk, Gloria Wolkerstorfer, Antonio Pepe, Jan Egger, Wolfgang von der Linden, Gerhard A. Holzapfel 2022-02-21 Beyond Medical Imaging-A Review of Multimodal Deep Learning in Radiology Lars Heiliger, Anjany Sekuboyina, Björn Menze, Jan Egger, Jens Kleesiek TechRxiv — 2022-02-03 AVT: Multicenter aortic vessel tree CTA dataset collection with ground truth segmentation masks Lukas Radl, Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Fen-hua Zhao, Jan Egger 2022-02 Sparse Convolutional Neural Networks for Medical Image Analysis Jianning Li, Christina Gsaxner, Antonio Pepe, Dieter Schmalstieg, Jens Kleesiek, Jan Egger 2022-02 Studierfenster: an Open Science Cloud-Based Medical Imaging Analysis Platform Jan Egger, Daniel Wild, Maximilian Weber, Christopher A. Ramirez Bedoya, Florian Karner, Alexander Prutsch, Michael Schmied, Christina Dionysio, Dominik Krobath, Yuan Jin 2022-01-21

2021

Inside-out instrument tracking for surgical navigation in augmented reality Christina Gsaxner, Jianning Li, Antonio Pepe, Dieter Schmalstieg, Jan Egger Proceedings of the 27th ACM Symposium on Virtual Reality Software and Technology — 2021-12-08 Learning to rearrange voxels in binary segmentation masks for smooth manifold triangulation Jianning Li, Antonio Pepe, Christina Gsaxner, Yuan Jin, Jan Egger Cranial Implant Design Challenge — 2021-12-03 PCA-Skull: 3D Skull Shape Modelling Using Principal Component Analysis Lei Yu, Jianning Li, Jan Egger Cranial Implant Design Challenge — 2021-12-03 Sparse Convolutional Neural Network for Skull Reconstruction Artem Kroviakov, Jianning Li, Jan Egger Cranial Implant Design Challenge — 2021-12-03 Towards the Automatization of Cranial Implant Design in Cranioplasty II Jianning Li, Jan Egger Springer International Publishing — 2021-12-03 MUG500+: Database of 500 high-resolution healthy human skulls and 29 craniotomy skulls and implants Jianning Li, Marcell Krall, Florian Trummer, Afaque Rafique Memon, Antonio Pepe, Christina Gsaxner, Yuan Jin, Xiaojun Chen, Hannes Deutschmann, Ulrike Zefferer 2021-12 Automated cross-sectional view selection in CT angiography of aortic dissections with uncertainty awareness and retrospective clinical annotations Antonio Pepe, Jan Egger, Marina Codari, Martin J. Willemink, Christina Gsaxner, Jianning Li, Peter M. Roth, Gabriel Mistelbauer, Dieter Schmalstieg, Dominik Fleischmann 2021-11-22 Deep learning—a first meta-survey of selected reviews across scientific disciplines, their commonalities, challenges and research impact Jan Egger, Antonio Pepe, Christina Gsaxner, Yuan Jin, Jianning Li, Roman Kern 2021-11-17 Holographic augmented reality for DIEP flap harvest Tycho S Wesselius, Jene W Meulstee, Gijs Luijten, Tong Xi, Thomas Maal, Dietmar JO Ulrich Plastic and reconstructive surgery — 2021-10-18 Automatic skull defect restoration and cranial implant generation for cranioplasty Jianning Li, Gord von Campe, Antonio Pepe, Christina Gsaxner, Enpeng Wang, Xiaojun Chen, Ulrike Zefferer, Martin Tödtling, Marcell Krall, Hannes Deutschmann 2021-10 A review on patient-specific facial and cranial implant design using Artificial Intelligence (AI) techniques Afaque Rafique Memon, Jianning Li, Jan Egger, Xiaojun Chen 2021-09 AutoImplant 2020-first MICCAI challenge on automatic cranial implant design Jianning Li, Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Estacio, Christian Doenitz, Heiko Ramm, Haochen Shi 2021-09 Ai-based aortic vessel tree segmentation for cardiovascular diseases treatment: status quo Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Fen-hua Zhao, Jens Kleesiek, Alejandro F. Frangi, Jan Egger 2021-08-06 Effects of Pre-Operative Risk Factors on Intensive Care Unit Length of Stay (ICU-LOS) in Major Oral and Maxillofacial Cancer Surgery Jürgen Wallner, Michael Schwaiger, Sarah-Jayne Edmondson, Irene Mischak, Jan Egger, Matthias Feichtinger, Wolfgang Zemann, Mauro Pau 2021-08-04 Computer-Aided Oral and Maxillofacial Surgery: Developments, Applications, and Future Perspectives Jan Egger, Xiaojun Chen Academic Press — 2021-05-05 Augmented reality in oral and maxillofacial surgery Christina Gsaxner, Ulrich Eck, Dieter Schmalstieg, Nassir Navab, Jan Egger Computer-Aided Oral and Maxillofacial Surgery — 2021-04-29 Deep learning and generative adversarial networks in oral and maxillofacial surgery Antonio Pepe, Gianpaolo Francesco Trotta, Christina Gsaxner, Antonio Brunetti, Giacomo Donato Cascarano, Vitoantonio Bevilacqua, Dinggang Shen, Jan Egger 2021-04-29 Medical image segmentation in oral-maxillofacial surgery Jianning Li, Marius Erdt, Firdaus Janoos, Ti-chiun Chang, Jan Egger 2021-04-29 Radiomics in head and neck cancer Maria Gonçalves, Christina Gsaxner, Jan Egger, Victor Alves Computer-Aided Oral and Maxillofacial Surgery — 2021-04-29 SkullBreak/SkullFix–Dataset for automatic cranial implant design and a benchmark for volumetric shape learning tasks Oldřich Kodym, Jianning Li, Antonio Pepe, Christina Gsaxner, Sasank Chilamkurthy, Jan Egger, Michal Španěl 2021-04 A cloud-based centerline algorithm for Studierfenster Christina Dionysio, Daniel Wild, Antonio Pepe, Christina Gsaxner, Jianning Li, Luis Alvarez, Jan Egger Medical Imaging 2021: Imaging Informatics for Healthcare, Research, and Applications — 2021-02-15 A patch-based-approach for aortic landmarking Michael Schmied, Antonio Pepe, Jan Egger Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging — 2021-02-15 A web client-based online DICOM browser and NRRD converter for Studierfenster Christopher A. Ramirez Bedoya, Daniel Wild, Antonio Pepe, Christina Gsaxner, Jianning Li, Jan Egger Medical Imaging 2021: Imaging Informatics for Healthcare, Research, and Applications — 2021-02-15 An online platform for automatic skull defect restoration and cranial implant design Jianning Li, Antonio Pepe, Christina Gsaxner, Jan Egger Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling — 2021-02-15 Deep learning and particle filter-based aortic dissection vessel tree segmentation Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Jan Egger Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging — 2021-02-15 Synthetic skull bone defects for automatic patient-specific craniofacial implant design Jianning Li, Christina Gsaxner, Antonio Pepe, Ana Morais, Victor Alves, Gord von Campe, Jürgen Wallner, Jan Egger 2021-01-29

2020

Towards the automatization of cranial implant design in cranioplasty Jianning Li, Jan Egger Cham: Springer — 2020-12-04